1 HisKA#1
78-146 aa · 69 aa · 23.2% of protein
Raw token
HisKA:78:0.0000000000101:146:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS05535
Histidine kinase, Classic
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000507785#HMPREF1202_RS05535Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 298 aa (58.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
193-297 aa · 105 aa · 35.2% of protein
Raw token
HATPase_c:193:2.82e-19:297:107:109- Raw architecture: HisKA:78:0.0000000000101:146:69:64#HATPase_c:193:2.82e-19:297:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000507785::NZ_KI669408.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span312256-313152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_01113RefSeq proteinWP_005333486.1
Context group ID
GCF_000507785::NZ_KI669408.1::G00016Context members
HMPREF1202_RS05535
Partner locus tags
HMPREF1202_RS05535
Partner old locus tags
HMPREF1202_01113
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333486.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V1JU64Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V1JU64_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS05535Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_01113Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669408.1Sequence record reported by the local genomic context database.
Genomic interval312 256-313 152 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span312 256-313 152 ntGCF_000507785::NZ_KI669408.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669408.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669408.1All displayed genes belong to this local TCS context.
Neighborhood span312 256-313 152 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
312 256 nt313 152 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1202_RS05535GCF_000507785#HMPREF1202_RS05535
HKClassicCurrent focus
312 256-313 152 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS08890Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888644
Simplified PFAM architecture for HKOC_2888644
PFAM domain coverage: 163 / 298 aa (54.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-145] | HATPase_c[193-297]
- Domain count: 2
- Matched identifier: HKOC_2888644
- Positioned domains: HisKA 88-145 ; HATPase_c 193-297
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS08890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key