1 HAMP#1
183-252 aa · 70 aa · 14.0% of protein
Raw token
HAMP:183:0.000000000000254:252:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS03280
Histidine kinase, Classic
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507785#HMPREF1202_RS03280Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 500 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 HisKA#2
277-344 aa · 68 aa · 13.6% of protein
Raw token
HisKA:277:0.00000000000000292:344:68:643 HATPase_c#3
389-499 aa · 111 aa · 22.2% of protein
Raw token
HATPase_c:389:3.58e-20:499:112:109- Raw architecture: HAMP:183:0.000000000000254:252:70:69#HisKA:277:0.00000000000000292:344:68:64#HATPase_c:389:3.58e-20:499:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507785::NZ_KI669407.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span727823-730011Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_00666RefSeq proteinWP_226969420.1
Context group ID
GCF_000507785::NZ_KI669407.1::G00007Context members
HMPREF1202_RS03275HMPREF1202_RS03280
Partner locus tags
HMPREF1202_RS03275HMPREF1202_RS03280
Partner old locus tags
HMPREF1202_00665HMPREF1202_00666
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226969420.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS03280Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_00666Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669407.1Sequence record reported by the local genomic context database.
Genomic interval728 509-730 011 nt1 503 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span727 823-730 011 ntGCF_000507785::NZ_KI669407.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669407.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669407.1All displayed genes belong to this local TCS context.
Neighborhood span727 823-730 011 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
727 823 nt730 011 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1202_RS03275GCF_000507785#HMPREF1202_RS03275
RROmpR
727 823-728 500 nt · Forward (+)
HMPREF1202_RS03280GCF_000507785#HMPREF1202_RS03280
HKClassicCurrent focus
728 509-730 011 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507785#HMPREF1202_RS03280The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1475027
Simplified PFAM architecture for HKOC_1475027
PFAM domain coverage: 227 / 500 aa (45.4%)
1 aa500 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-251] | HisKA[277-342] | HATPase_c[389-498]
- Domain count: 3
- Matched identifier: HKOC_1475027
- Positioned domains: HAMP 201-251 ; HisKA 277-342 ; HATPase_c 389-498
Cluster members and taxonomy
Representative gene: GCF_000507785#HMPREF1202_RS03280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key