1 Response_reg#1
6-114 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:6:8.08e-27:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS01965
Response regulator, unclassified
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507785#HMPREF1202_RS01965Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 531 aa (33.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
442-479 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:442:0.00000000391:479:38:423 HTH_AraC#3
500-529 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:500:0.0000000587:529:30:42- Raw architecture: Response_reg:6:8.08e-27:114:109:111#HTH_AraC:442:0.00000000391:479:38:42#HTH_AraC:500:0.0000000587:529:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507785::NZ_KI669407.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span415388-418955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_00396RefSeq proteinWP_005609024.1
Context group ID
GCF_000507785::NZ_KI669407.1::G00002Context members
HMPREF1202_RS01965HMPREF1202_RS01970
Partner locus tags
HMPREF1202_RS01965HMPREF1202_RS01970
Partner old locus tags
HMPREF1202_00396HMPREF1202_00397
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005609024.1Primary protein accession used for annex mappings.
UniProt accessionB5CT72Primary UniProt accession resolved in the annex database.
UniProt IDB5CT72_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS01965Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_00396Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669407.1Sequence record reported by the local genomic context database.
Genomic interval415 388-416 983 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span415 388-418 955 ntGCF_000507785::NZ_KI669407.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669407.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669407.1All displayed genes belong to this local TCS context.
Neighborhood span415 388-418 955 nt3 568 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
415 388 nt418 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1202_RS01965GCF_000507785#HMPREF1202_RS01965
RRunclassifiedCurrent focus
415 388-416 983 nt · Forward (+)
HMPREF1202_RS01970GCF_000507785#HMPREF1202_RS01970
HKClassic
417 120-418 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS01845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109559
Simplified PFAM architecture for RROC_0109559
PFAM domain coverage: 316 / 531 aa (59.5%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[166-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0109559
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GGDEF_2 166-291 ; GGDEF_2 166-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS01845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key