1 Response_reg#1
5-115 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:5:7.1e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LM1212_RS0123525
Response regulator OmpR family
Bacillus thuringiensis LM1212 · GCF_000500585
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000500585#LM1212_RS0123525Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 239 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.2% of protein
Raw token
Trans_reg_C:156:4.44e-38:232:77:77- Raw architecture: Response_reg:5:7.1e-38:115:111:111#Trans_reg_C:156:4.44e-38:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000500585::NZ_AYPV01000027.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span511316-513791Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000500585::NZ_AYPV01000027.1::G00040Context members
LM1212_RS0123520LM1212_RS0123525
Partner locus tags
LM1212_RS0123520LM1212_RS0123525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001065225.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7KSJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7KSJ8_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLM1212_RS0123525Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AYPV01000027.1Sequence record reported by the local genomic context database.
Genomic interval513 072-513 791 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span511 316-513 791 ntGCF_000500585::NZ_AYPV01000027.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000500585::NZ_AYPV01000027.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AYPV01000027.1All displayed genes belong to this local TCS context.
Neighborhood span511 316-513 791 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
511 316 nt513 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LM1212_RS0123520GCF_000500585#LM1212_RS0123520
HKClassic
511 316-513 079 nt · Reverse (-)
LM1212_RS0123525GCF_000500585#LM1212_RS0123525
RROmpRCurrent focus
513 072-513 791 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000500585#LM1212_RS0123525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0907212
Simplified PFAM architecture for RROC_0907212
PFAM domain coverage: 188 / 239 aa (78.7%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_0907212
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000500585#LM1212_RS0123525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 417 985 · GCF_000500585
AssemblyBacillus thuringiensis strain LM1212 · Scaffoldhaploid
Genome composition6 062 180 bp · 35,5% GCBacillus thuringiensis LM1212
Signal transduction countsGenes 103 · HK 51 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key