1 Response_reg#1
6-111 aa · 106 aa · 47.1% of protein
Raw token
Response_reg:6:9.99e-31:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
YBT1518_RS17540
Response regulator OmpR family
Bacillus thuringiensis YBT-1518 · GCF_000497525
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000497525#YBT1518_RS17540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:2.59e-29:222:77:77- Raw architecture: Response_reg:6:9.99e-31:111:107:111#Trans_reg_C:147:2.59e-29:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000497525::NC_022873.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3491670-3493725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagYBT1518_17715RefSeq proteinWP_023522477.1
Context group ID
GCF_000497525::NC_022873.1::G00044Context members
YBT1518_RS17535YBT1518_RS17540
Partner locus tags
YBT1518_RS17535YBT1518_RS17540
Partner old locus tags
YBT1518_17710YBT1518_17715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023522477.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3PGS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3PGS8_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagYBT1518_RS17540Primary locus identifier stored in the genes table.
Old locus tagYBT1518_17715Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_022873.1Sequence record reported by the local genomic context database.
Genomic interval3 493 048-3 493 725 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 491 670-3 493 725 ntGCF_000497525::NC_022873.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000497525::NC_022873.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_022873.1All displayed genes belong to this local TCS context.
Neighborhood span3 491 670-3 493 725 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 491 670 nt3 493 725 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
YBT1518_RS17535GCF_000497525#YBT1518_RS17535
HKClassic
3 491 670-3 493 046 nt · Reverse (-)
YBT1518_RS17540GCF_000497525#YBT1518_RS17540
RROmpRCurrent focus
3 493 048-3 493 725 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS17540The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466878
Simplified PFAM architecture for RROC_1466878
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1466878
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS17540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 529 122 · GCF_000497525
AssemblyASM49752v2 · Complete Genomehaploid
Genome composition6 672 921 bp · 35,5% GCBacillus thuringiensis YBT-1518
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key