1 HAMP#1
163-226 aa · 64 aa · 14.2% of protein
Raw token
HAMP:163:0.0000000000109:226:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
YBT1518_RS11135
Histidine kinase, Classic
Bacillus thuringiensis YBT-1518 · GCF_000497525
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000497525#YBT1518_RS11135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 452 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
235-302 aa · 68 aa · 15.0% of protein
Raw token
HisKA:235:1e-17:302:68:643 HATPase_c#3
346-452 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:346:1.23e-29:452:108:109- Raw architecture: HAMP:163:0.0000000000109:226:64:69#HisKA:235:1e-17:302:68:64#HATPase_c:346:1.23e-29:452:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000497525::NC_022873.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2170549-2172593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagYBT1518_10995RefSeq proteinWP_023521728.1
Context group ID
GCF_000497525::NC_022873.1::G00028Context members
YBT1518_RS11130YBT1518_RS11135
Partner locus tags
YBT1518_RS11130YBT1518_RS11135
Partner old locus tags
YBT1518_10990YBT1518_10995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023521728.1Primary protein accession used for annex mappings.
UniProt accessionA0A9W3KB41Primary UniProt accession resolved in the annex database.
UniProt IDA0A9W3KB41_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagYBT1518_RS11135Primary locus identifier stored in the genes table.
Old locus tagYBT1518_10995Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_022873.1Sequence record reported by the local genomic context database.
Genomic interval2 171 235-2 172 593 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 170 549-2 172 593 ntGCF_000497525::NC_022873.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000497525::NC_022873.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_022873.1All displayed genes belong to this local TCS context.
Neighborhood span2 170 549-2 172 593 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 170 549 nt2 172 593 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
YBT1518_RS11130GCF_000497525#YBT1518_RS11130
RROmpR
2 170 549-2 171 238 nt · Forward (+)
YBT1518_RS11135GCF_000497525#YBT1518_RS11135
HKClassicCurrent focus
2 171 235-2 172 593 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000497525#YBT1518_RS11135The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1937775
Simplified PFAM architecture for HKOC_1937775
PFAM domain coverage: 221 / 452 aa (48.9%)
1 aa452 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[180-226] | HisKA[235-301] | HATPase_c[346-452]
- Domain count: 3
- Matched identifier: HKOC_1937775
- Positioned domains: HAMP 180-226 ; HisKA 235-301 ; HATPase_c 346-452
Cluster members and taxonomy
Representative gene: GCF_000497525#YBT1518_RS11135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 529 122 · GCF_000497525
AssemblyASM49752v2 · Complete Genomehaploid
Genome composition6 672 921 bp · 35,5% GCBacillus thuringiensis YBT-1518
Signal transduction countsGenes 120 · HK 65 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key