1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:1.23e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K316_RS0113805
Response regulator OmpR family
Blautia wexlerae DSM 19850 · GCF_000484655
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000484655#K316_RS0113805Stable P2CS identifier used across views.
GenomeGCF_000484655Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-228 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:154:2.54e-35:228:77:77- Raw architecture: Response_reg:7:1.23e-36:116:111:111#Trans_reg_C:154:2.54e-35:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000484655::NZ_AXVN01000052.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23631-25741Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000484655::NZ_AXVN01000052.1::G00058Context members
K316_RS0113800K316_RS0113805
Partner locus tags
K316_RS0113800K316_RS0113805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025579807.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8XTW6Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8XTW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK316_RS0113805Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AXVN01000052.1Sequence record reported by the local genomic context database.
Genomic interval25 040-25 741 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 631-25 741 ntGCF_000484655::NZ_AXVN01000052.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000484655::NZ_AXVN01000052.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AXVN01000052.1All displayed genes belong to this local TCS context.
Neighborhood span23 631-25 741 nt2 111 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 631 nt25 741 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K316_RS0113800GCF_000484655#K316_RS0113800
HKClassic
23 631-25 043 nt · Reverse (-)
K316_RS0113805GCF_000484655#K316_RS0113805
RROmpRCurrent focus
25 040-25 741 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0113805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082870
Simplified PFAM architecture for RROC_1082870
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1082870
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0113805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 121 115 · GCF_000484655
AssemblyASM48465v1 · Scaffoldhaploid
Genome composition4 508 468 bp · 41,5% GCBlautia wexlerae DSM 19850
Signal transduction countsGenes 162 · HK 80 · RR 80CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key