1 dCache_1#1
200-303 aa · 104 aa · 15.4% of protein
Raw token
dCache_1:200:0.000000192:303:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS16205
Probable incomplete histidine kinase
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength674 aaTM0ValidatedNoCompleteNoContextNo local context
Gene IDGCF_000469345#HMPREF0373_RS16205Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 HMPREF0373_RS16205MIST4
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinase
Protein length674 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 674 aa (27.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinaseSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa674 aa
Domain-by-domain annotation2 items
2 His_kinase#2
456-536 aa · 81 aa · 12.0% of protein
Raw token
His_kinase:456:7.69e-35:536:81:80- Raw architecture: dCache_1:200:0.000000192:303:113:195#His_kinase:456:7.69e-35:536:81:80
- Domain description: 1 dCache_1,1 His_kinase
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: No
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS16205Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key