1 HisKA#1
674-739 aa · 66 aa · 7.3% of protein
Raw token
HisKA:674:0.00000000000000306:739:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS16055
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength907 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS16055Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length907 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 907 aa (19.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa907 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
785-891 aa · 107 aa · 11.8% of protein
Raw token
HATPase_c:785:0.0000000000231:891:112:109- Raw architecture: HisKA:674:0.00000000000000306:739:66:64#HATPase_c:785:0.0000000000231:891:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271133.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16509-19954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_01026RefSeq proteinWP_021739313.1
Context group ID
GCF_000469345::NZ_KI271133.1::G00030Context members
HMPREF0373_RS16055HMPREF0373_RS08660
Partner locus tags
HMPREF0373_RS16055HMPREF0373_RS08660
Partner old locus tags
HMPREF0373_01026HMPREF0373_01027
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739313.1Primary protein accession used for annex mappings.
UniProt accessionU2Q0Z4Primary UniProt accession resolved in the annex database.
UniProt IDU2Q0Z4_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS16055Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_01026Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271133.1Sequence record reported by the local genomic context database.
Genomic interval16 509-19 232 nt2 724 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span16 509-19 954 ntGCF_000469345::NZ_KI271133.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271133.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271133.1All displayed genes belong to this local TCS context.
Neighborhood span16 509-19 954 nt3 446 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 509 nt19 954 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS16055GCF_000469345#HMPREF0373_RS16055
HKClassicCurrent focus
16 509-19 232 nt · Reverse (-)
HMPREF0373_RS08660GCF_000469345#HMPREF0373_RS08660
RROmpR
19 247-19 954 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS16055The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0395290
Simplified PFAM architecture for HKOC_0395290
PFAM domain coverage: 158 / 907 aa (17.4%)
1 aa907 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[674-739] | HATPase_c[786-877]
- Domain count: 2
- Matched identifier: HKOC_0395290
- Positioned domains: HisKA 674-739 ; HATPase_c 786-877
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS16055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key