1 HisKA#1
454-520 aa · 67 aa · 9.9% of protein
Raw token
HisKA:454:2.83e-16:520:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS15980
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength675 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS15980Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length675 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 675 aa (25.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa675 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
566-669 aa · 104 aa · 15.4% of protein
Raw token
HATPase_c:566:0.000000000000828:669:111:109- Raw architecture: HisKA:454:2.83e-16:520:67:64#HATPase_c:566:0.000000000000828:669:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271108.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82334-85063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_03191RefSeq proteinWP_021738558.1
Context group ID
GCF_000469345::NZ_KI271108.1::G00015Context members
HMPREF0373_RS05100HMPREF0373_RS15980
Partner locus tags
HMPREF0373_RS05100HMPREF0373_RS15980
Partner old locus tags
HMPREF0373_03190HMPREF0373_03191
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738558.1Primary protein accession used for annex mappings.
UniProt accessionU2PD19Primary UniProt accession resolved in the annex database.
UniProt IDU2PD19_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS15980Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_03191Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271108.1Sequence record reported by the local genomic context database.
Genomic interval83 036-85 063 nt2 028 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 334-85 063 ntGCF_000469345::NZ_KI271108.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271108.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271108.1All displayed genes belong to this local TCS context.
Neighborhood span82 334-85 063 nt2 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 334 nt85 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS05100GCF_000469345#HMPREF0373_RS05100
RROmpR
82 334-83 032 nt · Forward (+)
HMPREF0373_RS15980GCF_000469345#HMPREF0373_RS15980
HKClassicCurrent focus
83 036-85 063 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS15980The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0830845
Simplified PFAM architecture for HKOC_0830845
PFAM domain coverage: 161 / 675 aa (23.9%)
1 aa675 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[455-520] | HATPase_c[567-661]
- Domain count: 2
- Matched identifier: HKOC_0830845
- Positioned domains: HisKA 455-520 ; HATPase_c 567-661
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS15980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key