1 SBP_bac_3#1
43-259 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:43:4.44e-26:259:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS14640
Histidine kinase, Hybrid
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeHybridLength957 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS14640Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length957 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 957 aa (75.2%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa957 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.1% of protein
Raw token
SBP_bac_3:281:3.19e-19:482:215:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:3.45e-17:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.3% of protein
Raw token
HATPase_c:691:1.02e-26:808:119:1095 Response_reg#5
829-945 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:829:3.54e-30:945:117:111- Raw architecture: SBP_bac_3:43:4.44e-26:259:230:224#SBP_bac_3:281:3.19e-19:482:215:224#HisKA:577:3.45e-17:642:66:64#HATPase_c:691:1.02e-26:808:119:109#Response_reg:829:3.54e-30:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271185.1::G00047
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span119179-124003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_02036RefSeq proteinWP_044964761.1
Context group ID
GCF_000469345::NZ_KI271185.1::G00047Context members
HMPREF0373_RS14635HMPREF0373_RS14640
Partner locus tags
HMPREF0373_RS14635HMPREF0373_RS14640
Partner old locus tags
HMPREF0373_02035HMPREF0373_02036
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044964761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS14640Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_02036Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271185.1Sequence record reported by the local genomic context database.
Genomic interval121 130-124 003 nt2 874 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 179-124 003 ntGCF_000469345::NZ_KI271185.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271185.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271185.1All displayed genes belong to this local TCS context.
Neighborhood span119 179-124 003 nt4 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 179 nt124 003 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS14635GCF_000469345#HMPREF0373_RS14635
HKHybrid
119 179-121 101 nt · Reverse (-)
HMPREF0373_RS14640GCF_000469345#HMPREF0373_RS14640
HKHybridCurrent focus
121 130-124 003 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS14640The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0320054
Simplified PFAM architecture for HKOC_0320054
PFAM domain coverage: 498 / 957 aa (52.0%)
1 aa957 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0320054
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS14640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key