1 HisKA#1
123-180 aa · 58 aa · 16.4% of protein
Raw token
HisKA:123:0.0000104:180:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS14570
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS14570Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 353 aa (45.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa353 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
239-342 aa · 104 aa · 29.5% of protein
Raw token
HATPase_c:239:5.38e-27:342:104:109- Raw architecture: HisKA:123:0.0000104:180:59:64#HATPase_c:239:5.38e-27:342:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271185.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span102237-103966Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_02022RefSeq proteinWP_021740543.1
Context group ID
GCF_000469345::NZ_KI271185.1::G00046Context members
HMPREF0373_RS14570HMPREF0373_RS14575
Partner locus tags
HMPREF0373_RS14570HMPREF0373_RS14575
Partner old locus tags
HMPREF0373_02022HMPREF0373_02023
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021740543.1Primary protein accession used for annex mappings.
UniProt accessionA0A844E005Primary UniProt accession resolved in the annex database.
UniProt IDA0A844E005_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS14570Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_02022Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271185.1Sequence record reported by the local genomic context database.
Genomic interval102 237-103 298 nt1 062 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 237-103 966 ntGCF_000469345::NZ_KI271185.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271185.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271185.1All displayed genes belong to this local TCS context.
Neighborhood span102 237-103 966 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 237 nt103 966 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS14570GCF_000469345#HMPREF0373_RS14570
HKClassicCurrent focus
102 237-103 298 nt · Reverse (-)
HMPREF0373_RS14575GCF_000469345#HMPREF0373_RS14575
RROmpR
103 295-103 966 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS14570The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2784442
Simplified PFAM architecture for HKOC_2784442
PFAM domain coverage: 105 / 353 aa (29.7%)
1 aa353 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[239-343]
- Domain count: 1
- Matched identifier: HKOC_2784442
- Positioned domains: HATPase_c 239-343
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS14570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key