1 HAMP#1
89-159 aa · 71 aa · 18.7% of protein
Raw token
HAMP:89:0.000000000411:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS09350
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS09350Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 380 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.6% of protein
Raw token
HisKA:164:0.00000000000852:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.7% of protein
Raw token
HATPase_c:272:4.32e-34:380:109:109- Raw architecture: HAMP:89:0.000000000411:159:71:69#HisKA:164:0.00000000000852:230:67:64#HATPase_c:272:4.32e-34:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271134.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93218-95037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00307RefSeq proteinWP_021739457.1
Context group ID
GCF_000469345::NZ_KI271134.1::G00035Context members
HMPREF0373_RS09345HMPREF0373_RS09350
Partner locus tags
HMPREF0373_RS09345HMPREF0373_RS09350
Partner old locus tags
HMPREF0373_00306HMPREF0373_00307
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739457.1Primary protein accession used for annex mappings.
UniProt accessionU2RM97Primary UniProt accession resolved in the annex database.
UniProt IDU2RM97_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS09350Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00307Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271134.1Sequence record reported by the local genomic context database.
Genomic interval93 895-95 037 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span93 218-95 037 ntGCF_000469345::NZ_KI271134.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271134.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271134.1All displayed genes belong to this local TCS context.
Neighborhood span93 218-95 037 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 218 nt95 037 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS09345GCF_000469345#HMPREF0373_RS09345
RROmpR
93 218-93 898 nt · Forward (+)
HMPREF0373_RS09350GCF_000469345#HMPREF0373_RS09350
HKClassicCurrent focus
93 895-95 037 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS09350The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2610603
Simplified PFAM architecture for HKOC_2610603
PFAM domain coverage: 171 / 380 aa (45.0%)
1 aa380 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[275-379]
- Domain count: 2
- Matched identifier: HKOC_2610603
- Positioned domains: HisKA 164-229 ; HATPase_c 275-379
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS09350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key