1 Response_reg#1
6-117 aa · 112 aa · 21.4% of protein
Raw token
Response_reg:6:9.56e-26:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS08915
Response regulator, unclassified
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassRRTypeunclassifiedLength524 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS08915Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length524 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 524 aa (36.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa524 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
430-471 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:430:0.000000000252:471:42:423 HTH_AraC#3
484-521 aa · 38 aa · 7.3% of protein
Raw token
HTH_AraC:484:0.0000114:521:38:42- Raw architecture: Response_reg:6:9.56e-26:117:112:111#HTH_AraC:430:0.000000000252:471:42:42#HTH_AraC:484:0.0000114:521:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271133.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59546-62927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_01079RefSeq proteinWP_021739365.1
Context group ID
GCF_000469345::NZ_KI271133.1::G00032Context members
HMPREF0373_RS08915HMPREF0373_RS08920
Partner locus tags
HMPREF0373_RS08915HMPREF0373_RS08920
Partner old locus tags
HMPREF0373_01079HMPREF0373_01080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739365.1Primary protein accession used for annex mappings.
UniProt accessionU2R7I8Primary UniProt accession resolved in the annex database.
UniProt IDU2R7I8_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS08915Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_01079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271133.1Sequence record reported by the local genomic context database.
Genomic interval59 546-61 120 nt1 575 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 546-62 927 ntGCF_000469345::NZ_KI271133.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271133.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271133.1All displayed genes belong to this local TCS context.
Neighborhood span59 546-62 927 nt3 382 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 546 nt62 927 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS08915GCF_000469345#HMPREF0373_RS08915
RRunclassifiedCurrent focus
59 546-61 120 nt · Reverse (-)
HMPREF0373_RS08920GCF_000469345#HMPREF0373_RS08920
HKClassic
61 095-62 927 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS08915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0120262
Simplified PFAM architecture for RROC_0120262
PFAM domain coverage: 192 / 524 aa (36.6%)
1 aa524 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[443-521]
- Domain count: 2
- Matched identifier: RROC_0120262
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 443-521 ; HTH_18 443-521
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS08915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key