1 HAMP#1
80-148 aa · 69 aa · 17.6% of protein
Raw token
HAMP:80:0.00000000364:148:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS08505
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS08505Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 392 aa (62.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
159-226 aa · 68 aa · 17.3% of protein
Raw token
HisKA:159:0.00000000000000124:226:68:643 HATPase_c#3
273-379 aa · 107 aa · 27.3% of protein
Raw token
HATPase_c:273:1.16e-22:379:109:109- Raw architecture: HAMP:80:0.00000000364:148:69:69#HisKA:159:0.00000000000000124:226:68:64#HATPase_c:273:1.16e-22:379:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271131.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25747-27622Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00996RefSeq proteinWP_021739283.1
Context group ID
GCF_000469345::NZ_KI271131.1::G00029Context members
HMPREF0373_RS08500HMPREF0373_RS08505
Partner locus tags
HMPREF0373_RS08500HMPREF0373_RS08505
Partner old locus tags
HMPREF0373_00995HMPREF0373_00996
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739283.1Primary protein accession used for annex mappings.
UniProt accessionU2RGC5Primary UniProt accession resolved in the annex database.
UniProt IDU2RGC5_EUBRADisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS08505Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00996Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271131.1Sequence record reported by the local genomic context database.
Genomic interval26 444-27 622 nt1 179 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 747-27 622 ntGCF_000469345::NZ_KI271131.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271131.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271131.1All displayed genes belong to this local TCS context.
Neighborhood span25 747-27 622 nt1 876 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 747 nt27 622 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS08500GCF_000469345#HMPREF0373_RS08500
RROmpR
25 747-26 457 nt · Reverse (-)
HMPREF0373_RS08505GCF_000469345#HMPREF0373_RS08505
HKClassicCurrent focus
26 444-27 622 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS08505The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2511770
Simplified PFAM architecture for HKOC_2511770
PFAM domain coverage: 225 / 392 aa (57.4%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[98-146] | HisKA[159-226] | HATPase_c[273-380]
- Domain count: 3
- Matched identifier: HKOC_2511770
- Positioned domains: HAMP 98-146 ; HisKA 159-226 ; HATPase_c 273-380
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS08505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key