1 HAMP#1
153-222 aa · 70 aa · 15.0% of protein
Raw token
HAMP:153:0.00000000000000636:222:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS07745
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS07745Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage233 / 467 aa (49.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-312 aa · 62 aa · 13.3% of protein
Raw token
HisKA:251:0.0000000118:312:62:643 HATPase_c#3
358-458 aa · 101 aa · 21.6% of protein
Raw token
HATPase_c:358:8.18e-23:458:101:109- Raw architecture: HAMP:153:0.00000000000000636:222:70:69#HisKA:251:0.0000000118:312:62:64#HATPase_c:358:8.18e-23:458:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271127.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55835-57899Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00202RefSeq proteinWP_021739123.1
Context group ID
GCF_000469345::NZ_KI271127.1::G00026Context members
HMPREF0373_RS07740HMPREF0373_RS07745
Partner locus tags
HMPREF0373_RS07740HMPREF0373_RS07745
Partner old locus tags
HMPREF0373_00201HMPREF0373_00202
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739123.1Primary protein accession used for annex mappings.
UniProt accessionU2Q7M8Primary UniProt accession resolved in the annex database.
UniProt IDU2Q7M8_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS07745Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00202Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271127.1Sequence record reported by the local genomic context database.
Genomic interval56 496-57 899 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 835-57 899 ntGCF_000469345::NZ_KI271127.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271127.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271127.1All displayed genes belong to this local TCS context.
Neighborhood span55 835-57 899 nt2 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 835 nt57 899 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS07740GCF_000469345#HMPREF0373_RS07740
RROmpR
55 835-56 512 nt · Forward (+)
HMPREF0373_RS07745GCF_000469345#HMPREF0373_RS07745
HKClassicCurrent focus
56 496-57 899 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS07745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1748438
Simplified PFAM architecture for HKOC_1748438
PFAM domain coverage: 217 / 467 aa (46.5%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[170-222] | HisKA[249-312] | HATPase_c[359-458]
- Domain count: 3
- Matched identifier: HKOC_1748438
- Positioned domains: HAMP 170-222 ; HisKA 249-312 ; HATPase_c 359-458
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS07745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key