1 dCache_1#1
206-309 aa · 104 aa · 16.5% of protein
Raw token
dCache_1:206:0.00002:309:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS07055
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength629 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000469345#HMPREF0373_RS07055Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length629 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 629 aa (58.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa629 aa
Domain-by-domain annotation4 items
2 HAMP#2
330-405 aa · 76 aa · 12.1% of protein
Raw token
HAMP:330:0.000000338:405:76:693 His_kinase#3
420-500 aa · 81 aa · 12.9% of protein
Raw token
His_kinase:420:5.23e-32:500:81:804 HATPase_c#4
519-626 aa · 108 aa · 17.2% of protein
Raw token
HATPase_c:519:0.000000166:626:111:109- Raw architecture: dCache_1:206:0.00002:309:113:195#HAMP:330:0.000000338:405:76:69#His_kinase:420:5.23e-32:500:81:80#HATPase_c:519:0.000000166:626:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000469345::NZ_KI271120.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_00796RefSeq proteinWP_021738984.1
Context group ID
GCF_000469345::NZ_KI271120.1::G00022Context members
HMPREF0373_RS07055
Partner locus tags
HMPREF0373_RS07055
Partner old locus tags
HMPREF0373_00796
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738984.1Primary protein accession used for annex mappings.
UniProt accessionU2R9I2Primary UniProt accession resolved in the annex database.
UniProt IDU2R9I2_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS07055Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_00796Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271120.1Sequence record reported by the local genomic context database.
Genomic interval1-1 892 nt1 892 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 892 ntGCF_000469345::NZ_KI271120.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271120.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271120.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 892 nt1 892 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 892 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF0373_RS07055GCF_000469345#HMPREF0373_RS07055
HKClassicCurrent focus
1-1 892 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS07055The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0950806
Simplified PFAM architecture for HKOC_0950806
PFAM domain coverage: 283 / 629 aa (45.0%)
1 aa629 aa
dCache_1His_kinase
- Simplified architecture: dCache_1 + His_kinase
- Raw architecture: dCache_1[67-268] | His_kinase[420-500]
- Domain count: 2
- Matched identifier: HKOC_0950806
- Positioned domains: dCache_1 67-268 ; His_kinase 420-500
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS07055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key