1 HAMP#1
171-242 aa · 72 aa · 14.7% of protein
Raw token
HAMP:171:0.00000000000611:242:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF0373_RS03780
Histidine kinase, Classic
Eubacterium ramulus ATCC 29099 · GCF_000469345
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000469345#HMPREF0373_RS03780Stable P2CS identifier used across views.
GenomeGCF_000469345Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 489 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-334 aa · 68 aa · 13.9% of protein
Raw token
HisKA:267:0.00000000000000476:334:68:643 HATPase_c#3
379-486 aa · 108 aa · 22.1% of protein
Raw token
HATPase_c:379:3.73e-19:486:109:109- Raw architecture: HAMP:171:0.00000000000611:242:72:69#HisKA:267:0.00000000000000476:334:68:64#HATPase_c:379:3.73e-19:486:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000469345::NZ_KI271096.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134688-136987Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF0373_02980RefSeq proteinWP_021738281.1
Context group ID
GCF_000469345::NZ_KI271096.1::G00011Context members
HMPREF0373_RS03775HMPREF0373_RS03780
Partner locus tags
HMPREF0373_RS03775HMPREF0373_RS03780
Partner old locus tags
HMPREF0373_02979HMPREF0373_02980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021738281.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S7D4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S7D4_EUBRADisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF0373_RS03780Primary locus identifier stored in the genes table.
Old locus tagHMPREF0373_02980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI271096.1Sequence record reported by the local genomic context database.
Genomic interval135 518-136 987 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span134 688-136 987 ntGCF_000469345::NZ_KI271096.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000469345::NZ_KI271096.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI271096.1All displayed genes belong to this local TCS context.
Neighborhood span134 688-136 987 nt2 300 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 688 nt136 987 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF0373_RS03775GCF_000469345#HMPREF0373_RS03775
RROmpR
134 688-135 362 nt · Forward (+)
HMPREF0373_RS03780GCF_000469345#HMPREF0373_RS03780
HKClassicCurrent focus
135 518-136 987 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS03780The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1541546
Simplified PFAM architecture for HKOC_1541546
PFAM domain coverage: 228 / 489 aa (46.6%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-241] | HisKA[267-332] | HATPase_c[379-486]
- Domain count: 3
- Matched identifier: HKOC_1541546
- Positioned domains: HAMP 188-241 ; HisKA 267-332 ; HATPase_c 379-486
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS03780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 256 908 · GCF_000469345
AssemblyASM46934v1 · Scaffoldhaploid
Genome composition3 447 136 bp · 42,5% GCEubacterium ramulus ATCC 29099
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key