1 Response_reg#1
41-127 aa · 87 aa · 38.2% of protein
Raw token
Response_reg:41:0.0000000000000912:127:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1587_RS07065
Response regulator NarL family
Bifidobacterium breve JCP7499 · GCF_000466545
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000466545#HMPREF1587_RS07065Stable P2CS identifier used across views.
GenomeGCF_000466545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 228 aa (63.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-221 aa · 57 aa · 25.0% of protein
Raw token
HTH_LUXR:165:0.00000000000000625:221:57:58- Raw architecture: Response_reg:41:0.0000000000000912:127:87:111#HTH_LUXR:165:0.00000000000000625:221:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000466545::NZ_KE993210.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span90457-91152Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1587_01975RefSeq proteinWP_003829410.1
Context group ID
GCF_000466545::NZ_KE993210.1::G00005Context members
HMPREF1587_RS07065
Partner locus tags
HMPREF1587_RS07065
Partner old locus tags
HMPREF1587_01975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829410.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S2VWI5Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S2VWI5_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1587_RS07065Primary locus identifier stored in the genes table.
Old locus tagHMPREF1587_01975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE993210.1Sequence record reported by the local genomic context database.
Genomic interval90 457-91 152 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span90 457-91 152 ntGCF_000466545::NZ_KE993210.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466545::NZ_KE993210.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE993210.1All displayed genes belong to this local TCS context.
Neighborhood span90 457-91 152 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 457 nt91 152 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1587_RS07065GCF_000466545#HMPREF1587_RS07065
RRNarLCurrent focus
90 457-91 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015555065#I2E43_RS09055Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0813992
Simplified PFAM architecture for RROC_0813992
PFAM domain coverage: 166 / 244 aa (68.0%)
1 aa244 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[30-142] | GerE[183-235]
- Domain count: 2
- Matched identifier: RROC_0813992
- Positioned domains: Response_reg 30-142 ; GerE 183-235
Cluster members and taxonomy
Representative gene: GCF_015555065#I2E43_RS09055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 261 072 · GCF_000466545
AssemblyASM46654v1 · Scaffoldhaploid
Genome composition2 369 717 bp · 58,5% GCBifidobacterium breve JCP7499
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key