1 Response_reg#1
6-117 aa · 112 aa · 44.4% of protein
Raw token
Response_reg:6:1.29e-21:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1548_RS09145
Response regulator, unclassified
Clostridium sp. KLE 1755 · GCF_000466465
ClassRRTypeunclassifiedLength252 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000466465#HMPREF1548_RS09145Stable P2CS identifier used across views.
GenomeGCF_000466465Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 252 aa (74.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
163-199 aa · 37 aa · 14.7% of protein
Raw token
HTH_AraC:163:0.00000451:199:37:423 HTH_AraC#3
212-249 aa · 38 aa · 15.1% of protein
Raw token
HTH_AraC:212:0.00000182:249:38:42- Raw architecture: Response_reg:6:1.29e-21:117:112:111#HTH_AraC:163:0.00000451:199:37:42#HTH_AraC:212:0.00000182:249:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000466465::NZ_KE992690.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29381-31905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1548_03122RefSeq proteinWP_025488998.1
Context group ID
GCF_000466465::NZ_KE992690.1::G00071Context members
HMPREF1548_RS09145HMPREF1548_RS09150
Partner locus tags
HMPREF1548_RS09145HMPREF1548_RS09150
Partner old locus tags
HMPREF1548_03122HMPREF1548_03123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025488998.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WNZ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WNZ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1548_RS09145Primary locus identifier stored in the genes table.
Old locus tagHMPREF1548_03122Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE992690.1Sequence record reported by the local genomic context database.
Genomic interval29 381-30 139 nt759 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 381-31 905 ntGCF_000466465::NZ_KE992690.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000466465::NZ_KE992690.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE992690.1All displayed genes belong to this local TCS context.
Neighborhood span29 381-31 905 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 381 nt31 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1548_RS09145GCF_000466465#HMPREF1548_RS09145
RRunclassifiedCurrent focus
29 381-30 139 nt · Reverse (-)
HMPREF1548_RS09150GCF_000466465#HMPREF1548_RS09150
HKClassic
30 127-31 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466465#HMPREF1548_RS09145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0704029
Simplified PFAM architecture for RROC_0704029
PFAM domain coverage: 191 / 252 aa (75.8%)
1 aa252 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[172-250]
- Domain count: 2
- Matched identifier: RROC_0704029
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 172-250 ; HTH_18 172-250
Cluster members and taxonomy
Representative gene: GCF_000466465#HMPREF1548_RS09145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 226 325 · GCF_000466465
AssemblyASM46646v2 · Scaffoldhaploid
Genome composition6 640 751 bp · 48,0% GCClostridium sp. KLE 1755
Signal transduction countsGenes 300 · HK 152 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key