1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000244:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QU3_RS05040
Histidine kinase, Classic
Clostridioides difficile P42 · GCF_000451865
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451865#QU3_RS05040Stable P2CS identifier used across views.
GenomeGCF_000451865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 468 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
357-466 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:357:1.51e-16:466:111:109- Raw architecture: HisKA:245:0.00000000000244:309:65:64#HATPase_c:357:1.51e-16:466:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451865::NZ_AVMJ01000029.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48688-50846Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQU3_0998RefSeq proteinWP_021423938.1
Context group ID
GCF_000451865::NZ_AVMJ01000029.1::G00018Context members
QU3_RS05035QU3_RS05040
Partner locus tags
QU3_RS05035QU3_RS05040
Partner old locus tags
QU3_0997QU3_0998
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021423938.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQU3_RS05040Primary locus identifier stored in the genes table.
Old locus tagQU3_0998Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMJ01000029.1Sequence record reported by the local genomic context database.
Genomic interval49 440-50 846 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 688-50 846 ntGCF_000451865::NZ_AVMJ01000029.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451865::NZ_AVMJ01000029.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMJ01000029.1All displayed genes belong to this local TCS context.
Neighborhood span48 688-50 846 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 688 nt50 846 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QU3_RS05035GCF_000451865#QU3_RS05035
RROmpR
48 688-49 395 nt · Forward (+)
QU3_RS05040GCF_000451865#QU3_RS05040
HKClassicCurrent focus
49 440-50 846 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451865#QU3_RS05040The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1738115
Simplified PFAM architecture for HKOC_1738115
PFAM domain coverage: 174 / 468 aa (37.2%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-465]
- Domain count: 2
- Matched identifier: HKOC_1738115
- Positioned domains: HisKA 245-310 ; HATPase_c 358-465
Cluster members and taxonomy
Representative gene: GCF_000451865#QU3_RS05040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 420 · GCF_000451865
AssemblyASM45186v2 · Contighaploid
Genome composition4 185 941 bp · 28,5% GCClostridioides difficile P42
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key