1 HisKA#1
100-165 aa · 66 aa · 20.4% of protein
Raw token
HisKA:100:0.0000000000000179:165:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSK_RS01745
Histidine kinase, Classic
Clostridioides difficile P29 · GCF_000451745
ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451745#QSK_RS01745Stable P2CS identifier used across views.
GenomeGCF_000451745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 323 aa (54.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
213-323 aa · 111 aa · 34.4% of protein
Raw token
HATPase_c:213:1.74e-28:323:111:109- Raw architecture: HisKA:100:0.0000000000000179:165:66:64#HATPase_c:213:1.74e-28:323:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451745::NZ_AVMD01000010.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSK_0350RefSeq proteinWP_032509098.1
Context group ID
GCF_000451745::NZ_AVMD01000010.1::G00002Context members
QSK_RS01745
Partner locus tags
QSK_RS01745
Partner old locus tags
QSK_0350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032509098.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSK_RS01745Primary locus identifier stored in the genes table.
Old locus tagQSK_0350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMD01000010.1Sequence record reported by the local genomic context database.
Genomic interval1-973 nt973 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-973 ntGCF_000451745::NZ_AVMD01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451745::NZ_AVMD01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMD01000010.1All displayed genes belong to this local TCS context.
Neighborhood span1-973 nt973 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt973 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QSK_RS01745GCF_000451745#QSK_RS01745
HKClassicCurrent focus
1-973 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS01745The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2866111
Simplified PFAM architecture for HKOC_2866111
PFAM domain coverage: 174 / 323 aa (53.9%)
1 aa323 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[101-165] | HATPase_c[214-322]
- Domain count: 2
- Matched identifier: HKOC_2866111
- Positioned domains: HisKA 101-165 ; HATPase_c 214-322
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS01745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 411 · GCF_000451745
AssemblyASM45174v2 · Contighaploid
Genome composition4 156 041 bp · 29,0% GCClostridioides difficile P29
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key