1 Response_reg#1
14-124 aa · 111 aa · 46.1% of protein
Raw token
Response_reg:14:8.45e-35:124:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQ5_RS02760
Response regulator OmpR family
Clostridioides difficile Y270 · GCF_000451385
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451385#QQ5_RS02760Stable P2CS identifier used across views.
GenomeGCF_000451385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 241 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 32.0% of protein
Raw token
Trans_reg_C:162:6.28e-27:238:77:77- Raw architecture: Response_reg:14:8.45e-35:124:111:111#Trans_reg_C:162:6.28e-27:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451385::NZ_AVLD01000008.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8675-10976Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQ5_0551RefSeq proteinWP_234780728.1
Context group ID
GCF_000451385::NZ_AVLD01000008.1::G00007Context members
QQ5_RS02755QQ5_RS02760
Partner locus tags
QQ5_RS02755QQ5_RS02760
Partner old locus tags
QQ5_0550QQ5_0551
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234780728.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQ5_RS02760Primary locus identifier stored in the genes table.
Old locus tagQQ5_0551Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLD01000008.1Sequence record reported by the local genomic context database.
Genomic interval10 251-10 976 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 675-10 976 ntGCF_000451385::NZ_AVLD01000008.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451385::NZ_AVLD01000008.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span8 675-10 976 nt2 302 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 675 nt10 976 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQ5_RS02755GCF_000451385#QQ5_RS02755
HKClassic
8 675-10 282 nt · Forward (+)
QQ5_RS02760GCF_000451385#QQ5_RS02760
RROmpRCurrent focus
10 251-10 976 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451385#QQ5_RS02760The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0863773
Simplified PFAM architecture for RROC_0863773
PFAM domain coverage: 188 / 241 aa (78.0%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[14-124] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0863773
- Positioned domains: Response_reg 14-124 ; Response_reg 14-124 ; Trans_reg_C 162-238 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_000451385#QQ5_RS02760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 385 · GCF_000451385
AssemblyASM45138v2 · Contighaploid
Genome composition4 149 527 bp · 28,5% GCClostridioides difficile Y270
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key