1 Response_reg#1
32-116 aa · 85 aa · 40.9% of protein
Raw token
Response_reg:32:5.26e-17:116:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQ1_RS00810
Response regulator LytTR family
Clostridioides difficile Y247 · GCF_000451145
ClassRRTypeLytTRLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451145#QQ1_RS00810Stable P2CS identifier used across views.
GenomeGCF_000451145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage146 / 208 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-197 aa · 61 aa · 29.3% of protein
Raw token
LytTR:137:1.57e-17:197:61:98- Raw architecture: Response_reg:32:5.26e-17:116:88:111#LytTR:137:1.57e-17:197:61:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451145::NZ_AVLB01000004.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span58624-59250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQ1_0166RefSeq proteinWP_021413306.1
Context group ID
GCF_000451145::NZ_AVLB01000004.1::G00001Context members
QQ1_RS00810
Partner locus tags
QQ1_RS00810
Partner old locus tags
QQ1_0166
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021413306.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQ1_RS00810Primary locus identifier stored in the genes table.
Old locus tagQQ1_0166Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLB01000004.1Sequence record reported by the local genomic context database.
Genomic interval58 624-59 250 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 624-59 250 ntGCF_000451145::NZ_AVLB01000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451145::NZ_AVLB01000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLB01000004.1All displayed genes belong to this local TCS context.
Neighborhood span58 624-59 250 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 624 nt59 250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQ1_RS00810GCF_000451145#QQ1_RS00810
RRLytTRCurrent focus
58 624-59 250 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451145#QQ1_RS00810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2057707
Simplified PFAM architecture for RROC_2057707
PFAM domain coverage: 163 / 208 aa (78.4%)
1 aa208 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[21-116] | LytTR[137-203]
- Domain count: 2
- Matched identifier: RROC_2057707
- Positioned domains: Response_reg 21-116 ; Response_reg 21-116 ; LytTR 137-203 ; LytTR 137-203
Cluster members and taxonomy
Representative gene: GCF_000451145#QQ1_RS00810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 383 · GCF_000451145
AssemblyASM45114v2 · Contighaploid
Genome composition4 053 085 bp · 28,5% GCClostridioides difficile Y247
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key