1 Response_reg#1
7-117 aa · 111 aa · 62.4% of protein
Raw token
Response_reg:7:7.72e-34:117:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QO7_RS02530
Response regulator, unclassified
Clostridioides difficile F314 · GCF_000450785
ClassRRTypeunclassifiedLength178 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450785#QO7_RS02530Stable P2CS identifier used across views.
GenomeGCF_000450785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length178 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 178 aa (62.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa178 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:7.72e-34:117:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450785::NZ_AVKP01000012.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52086-54220Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQO7_0515RefSeq proteinWP_021407702.1
Context group ID
GCF_000450785::NZ_AVKP01000012.1::G00008Context members
QO7_RS02525QO7_RS02530
Partner locus tags
QO7_RS02525QO7_RS02530
Partner old locus tags
QO7_0514QO7_0515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021407702.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQO7_RS02530Primary locus identifier stored in the genes table.
Old locus tagQO7_0515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKP01000012.1Sequence record reported by the local genomic context database.
Genomic interval53 684-54 220 nt537 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 086-54 220 ntGCF_000450785::NZ_AVKP01000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450785::NZ_AVKP01000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKP01000012.1All displayed genes belong to this local TCS context.
Neighborhood span52 086-54 220 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 086 nt54 220 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QO7_RS02525GCF_000450785#QO7_RS02525
HKClassic
52 086-53 693 nt · Forward (+)
QO7_RS02530GCF_000450785#QO7_RS02530
RRunclassifiedCurrent focus
53 684-54 220 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450785#QO7_RS02530The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2188786
Simplified PFAM architecture for RROC_2188786
PFAM domain coverage: 111 / 178 aa (62.4%)
1 aa178 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-117]
- Domain count: 1
- Matched identifier: RROC_2188786
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117
Cluster members and taxonomy
Representative gene: GCF_000450785#QO7_RS02530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 368 · GCF_000450785
AssemblyASM45078v2 · Contighaploid
Genome composition4 056 563 bp · 28,5% GCClostridioides difficile F314
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key