1 Response_reg#1
6-112 aa · 107 aa · 45.3% of protein
Raw token
Response_reg:6:5.98e-19:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QO5_RS17415
Response regulator LytTR family
Clostridioides difficile F253 · GCF_000450765
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450765#QO5_RS17415Stable P2CS identifier used across views.
GenomeGCF_000450765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 236 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:1.18e-18:227:93:98- Raw architecture: Response_reg:6:5.98e-19:112:110:111#LytTR:141:1.18e-18:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450765::NZ_AVKO01000418.1::G00059
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6649-7359Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQO5_3488RefSeq proteinWP_009893949.1
Context group ID
GCF_000450765::NZ_AVKO01000418.1::G00059Context members
QO5_RS17415
Partner locus tags
QO5_RS17415
Partner old locus tags
QO5_3488
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009893949.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R1G7Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R1G7_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQO5_RS17415Primary locus identifier stored in the genes table.
Old locus tagQO5_3488Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKO01000418.1Sequence record reported by the local genomic context database.
Genomic interval6 649-7 359 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 649-7 359 ntGCF_000450765::NZ_AVKO01000418.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450765::NZ_AVKO01000418.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKO01000418.1All displayed genes belong to this local TCS context.
Neighborhood span6 649-7 359 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 649 nt7 359 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QO5_RS17415GCF_000450765#QO5_RS17415
RRLytTRCurrent focus
6 649-7 359 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216850Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988174
Simplified PFAM architecture for RROC_0988174
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0988174
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 367 · GCF_000450765
AssemblyASM45076v2 · Contighaploid
Genome composition4 056 592 bp · 28,5% GCClostridioides difficile F253
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key