1 Response_reg#1
3-112 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:3:3.09e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIW_RS00100
Response regulator OmpR family
Clostridioides difficile DA00134 · GCF_000450085
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450085#QIW_RS00100Stable P2CS identifier used across views.
GenomeGCF_000450085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 228 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:147:2.25e-24:222:78:77- Raw architecture: Response_reg:3:3.09e-32:112:110:111#Trans_reg_C:147:2.25e-24:222:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450085::NZ_AVJB01000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9600-11314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIW_3875RefSeq proteinWP_021395509.1
Context group ID
GCF_000450085::NZ_AVJB01000002.1::G00002Context members
QIW_RS00100QIW_RS00105
Partner locus tags
QIW_RS00100QIW_RS00105
Partner old locus tags
QIW_3875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395509.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIW_RS00100Primary locus identifier stored in the genes table.
Old locus tagQIW_3875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJB01000002.1Sequence record reported by the local genomic context database.
Genomic interval9 600-10 286 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 600-11 314 ntGCF_000450085::NZ_AVJB01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450085::NZ_AVJB01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJB01000002.1All displayed genes belong to this local TCS context.
Neighborhood span9 600-11 314 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 600 nt11 314 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIW_RS00100GCF_000450085#QIW_RS00100
RROmpRCurrent focus
9 600-10 286 nt · Forward (+)
QIW_RS00105GCF_000450085#QIW_RS00105
HKClassic
10 283-11 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450085#QIW_RS00100The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304788
Simplified PFAM architecture for RROC_1304788
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1304788
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000450085#QIW_RS00100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 327 · GCF_000450085
AssemblyASM45008v2 · Contighaploid
Genome composition4 115 079 bp · 28,5% GCClostridioides difficile DA00134
Signal transduction countsGenes 106 · HK 52 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key