1 Response_reg#1
1-114 aa · 114 aa · 57.0% of protein
Raw token
Response_reg:1:1.42e-17:114:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIK_RS17050
Response regulator NarL family
Clostridioides difficile DA00126 · GCF_000449985
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449985#QIK_RS17050Stable P2CS identifier used across views.
GenomeGCF_000449985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 200 aa (85.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
134-190 aa · 57 aa · 28.5% of protein
Raw token
HTH_LUXR:134:1.81e-17:190:57:58- Raw architecture: Response_reg:1:1.42e-17:114:115:111#HTH_LUXR:134:1.81e-17:190:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449985::NZ_AVIW01000085.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span16939-17541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIK_3328RefSeq proteinWP_330381733.1
Context group ID
GCF_000449985::NZ_AVIW01000085.1::G00050Context members
QIK_RS17050
Partner locus tags
QIK_RS17050
Partner old locus tags
QIK_3328
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330381733.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIK_RS17050Primary locus identifier stored in the genes table.
Old locus tagQIK_3328Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIW01000085.1Sequence record reported by the local genomic context database.
Genomic interval16 939-17 541 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 939-17 541 ntGCF_000449985::NZ_AVIW01000085.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449985::NZ_AVIW01000085.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIW01000085.1All displayed genes belong to this local TCS context.
Neighborhood span16 939-17 541 nt603 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 939 nt17 541 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIK_RS17050GCF_000449985#QIK_RS17050
RRNarLCurrent focus
16 939-17 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449985#QIK_RS17050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2134992
Simplified PFAM architecture for RROC_2134992
PFAM domain coverage: 168 / 200 aa (84.0%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[1-113] | GerE[136-190]
- Domain count: 2
- Matched identifier: RROC_2134992
- Positioned domains: Response_reg 1-113 ; Response_reg 1-113 ; GerE 136-190 ; GerE 136-190
Cluster members and taxonomy
Representative gene: GCF_000449985#QIK_RS17050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 321 · GCF_000449985
AssemblyASM44998v2 · Contighaploid
Genome composition4 167 768 bp · 28,0% GCClostridioides difficile DA00126
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key