1 Response_reg#1
5-112 aa · 108 aa · 62.4% of protein
Raw token
Response_reg:5:8.56e-26:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIG_RS16470
Response regulator, unclassified
Clostridioides difficile DA00065 · GCF_000449945
ClassRRTypeunclassifiedLength173 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000449945#QIG_RS16470Stable P2CS identifier used across views.
GenomeGCF_000449945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length173 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage108 / 173 aa (62.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:8.56e-26:112:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000449945::NZ_AVIU01000132.1::G00053
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span209-3702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIG_3372RefSeq proteinWP_021393596.1
Context group ID
GCF_000449945::NZ_AVIU01000132.1::G00053Context members
QIG_RS16460QIG_RS16465QIG_RS16470
Partner locus tags
QIG_RS16460QIG_RS16465QIG_RS16470
Partner old locus tags
QIG_3369QIG_3370QIG_3372
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021393596.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIG_RS16470Primary locus identifier stored in the genes table.
Old locus tagQIG_3372Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIU01000132.1Sequence record reported by the local genomic context database.
Genomic interval3 181-3 702 nt522 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209-3 702 ntGCF_000449945::NZ_AVIU01000132.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449945::NZ_AVIU01000132.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIU01000132.1All displayed genes belong to this local TCS context.
Neighborhood span209-3 702 nt3 494 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 nt3 702 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QIG_RS16460GCF_000449945#QIG_RS16460
RROmpR
209-889 nt · Reverse (-)
QIG_RS16465GCF_000449945#QIG_RS16465
HKClassic
939-2 954 nt · Reverse (-)
QIG_RS16470GCF_000449945#QIG_RS16470
RRunclassifiedCurrent focus
3 181-3 702 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449945#QIG_RS16470The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2195354
Simplified PFAM architecture for RROC_2195354
PFAM domain coverage: 108 / 173 aa (62.4%)
1 aa173 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-112]
- Domain count: 1
- Matched identifier: RROC_2195354
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112
Cluster members and taxonomy
Representative gene: GCF_000449945#QIG_RS16470
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000449945#QIG_RS16470 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 319 · GCF_000449945
AssemblyASM44994v2 · Contighaploid
Genome composition4 138 699 bp · 28,5% GCClostridioides difficile DA00065
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key