1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:4.16e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIG_RS02275
Response regulator OmpR family
Clostridioides difficile DA00065 · GCF_000449945
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449945#QIG_RS02275Stable P2CS identifier used across views.
GenomeGCF_000449945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:3.6e-28:227:77:77- Raw architecture: Response_reg:4:4.16e-33:112:111:111#Trans_reg_C:151:3.6e-28:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449945::NZ_AVIU01000017.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51858-53993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIG_0458RefSeq proteinWP_003426338.1
Context group ID
GCF_000449945::NZ_AVIU01000017.1::G00004Context members
QIG_RS02275QIG_RS02280
Partner locus tags
QIG_RS02275QIG_RS02280
Partner old locus tags
QIG_0458QIG_0459
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003426338.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YRR8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YRR8_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIG_RS02275Primary locus identifier stored in the genes table.
Old locus tagQIG_0458Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIU01000017.1Sequence record reported by the local genomic context database.
Genomic interval51 858-52 550 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 858-53 993 ntGCF_000449945::NZ_AVIU01000017.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449945::NZ_AVIU01000017.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIU01000017.1All displayed genes belong to this local TCS context.
Neighborhood span51 858-53 993 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 858 nt53 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIG_RS02275GCF_000449945#QIG_RS02275
RROmpRCurrent focus
51 858-52 550 nt · Forward (+)
QIG_RS02280GCF_000449945#QIG_RS02280
HKClassic
52 569-53 993 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS02675Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200593
Simplified PFAM architecture for RROC_1200593
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1200593
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS02675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 319 · GCF_000449945
AssemblyASM44994v2 · Contighaploid
Genome composition4 138 699 bp · 28,5% GCClostridioides difficile DA00065
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key