1 HisKA#1
186-255 aa · 70 aa · 16.9% of protein
Raw token
HisKA:186:0.000000000000825:255:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIG_RS04700
Histidine kinase, Classic
Clostridioides difficile DA00065 · GCF_000449945
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449945#QIG_RS04700Stable P2CS identifier used across views.
GenomeGCF_000449945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 413 aa (42.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
302-407 aa · 106 aa · 25.7% of protein
Raw token
HATPase_c:302:1.36e-26:407:107:109- Raw architecture: HisKA:186:0.000000000000825:255:70:64#HATPase_c:302:1.36e-26:407:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449945::NZ_AVIU01000038.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17136-19071Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIG_0954RefSeq proteinWP_004453503.1
Context group ID
GCF_000449945::NZ_AVIU01000038.1::G00015Context members
QIG_RS04695QIG_RS04700
Partner locus tags
QIG_RS04695QIG_RS04700
Partner old locus tags
QIG_0953QIG_0954
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004453503.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YTN2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YTN2_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIG_RS04700Primary locus identifier stored in the genes table.
Old locus tagQIG_0954Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIU01000038.1Sequence record reported by the local genomic context database.
Genomic interval17 830-19 071 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 136-19 071 ntGCF_000449945::NZ_AVIU01000038.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449945::NZ_AVIU01000038.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIU01000038.1All displayed genes belong to this local TCS context.
Neighborhood span17 136-19 071 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 136 nt19 071 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIG_RS04695GCF_000449945#QIG_RS04695
RROmpR
17 136-17 819 nt · Forward (+)
QIG_RS04700GCF_000449945#QIG_RS04700
HKClassicCurrent focus
17 830-19 071 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS05025Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328157
Simplified PFAM architecture for HKOC_2328157
PFAM domain coverage: 172 / 413 aa (41.6%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-255] | HATPase_c[302-410]
- Domain count: 2
- Matched identifier: HKOC_2328157
- Positioned domains: HisKA 193-255 ; HATPase_c 302-410
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS05025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 319 · GCF_000449945
AssemblyASM44994v2 · Contighaploid
Genome composition4 138 699 bp · 28,5% GCClostridioides difficile DA00065
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key