1 Response_reg#1
6-114 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:6:3.01e-18:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIG_RS03120
Response regulator LytTR family
Clostridioides difficile DA00065 · GCF_000449945
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449945#QIG_RS03120Stable P2CS identifier used across views.
GenomeGCF_000449945Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 236 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-227 aa · 87 aa · 36.9% of protein
Raw token
LytTR:141:6.71e-20:227:93:98- Raw architecture: Response_reg:6:3.01e-18:114:112:111#LytTR:141:6.71e-20:227:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449945::NZ_AVIU01000023.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span38343-39053Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIG_0623RefSeq proteinWP_021388392.1
Context group ID
GCF_000449945::NZ_AVIU01000023.1::G00012Context members
QIG_RS03120
Partner locus tags
QIG_RS03120
Partner old locus tags
QIG_0623
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021388392.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3U0S3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3U0S3_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIG_RS03120Primary locus identifier stored in the genes table.
Old locus tagQIG_0623Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIU01000023.1Sequence record reported by the local genomic context database.
Genomic interval38 343-39 053 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 343-39 053 ntGCF_000449945::NZ_AVIU01000023.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449945::NZ_AVIU01000023.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIU01000023.1All displayed genes belong to this local TCS context.
Neighborhood span38 343-39 053 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 343 nt39 053 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIG_RS03120GCF_000449945#QIG_RS03120
RRLytTRCurrent focus
38 343-39 053 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210395#CDM68_RS03525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988766
Simplified PFAM architecture for RROC_0988766
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0988766
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000210395#CDM68_RS03525
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 254 total members. Page 1 / 6.
GCF_000210395#CDM68_RS03525 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 319 · GCF_000449945
AssemblyASM44994v2 · Contighaploid
Genome composition4 138 699 bp · 28,5% GCClostridioides difficile DA00065
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key