1 Response_reg#1
1-88 aa · 88 aa · 65.7% of protein
Raw token
Response_reg:1:1.84e-28:88:90:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIA_RS03290
Response regulator, CheY family
Clostridioides difficile 6057 · GCF_000449885
ClassRRTypeCheYLength134 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449885#QIA_RS03290Stable P2CS identifier used across views.
GenomeGCF_000449885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length134 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage88 / 134 aa (65.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa134 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:1.84e-28:88:90:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449885::NZ_AVIR01000072.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIA_0442RefSeq proteinWP_330383377.1
Context group ID
GCF_000449885::NZ_AVIR01000072.1::G00005Context members
QIA_RS03290QIA_RS03295
Partner locus tags
QIA_RS03290QIA_RS03295
Partner old locus tags
QIA_0442QIA_0443
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330383377.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIA_RS03290Primary locus identifier stored in the genes table.
Old locus tagQIA_0442Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIR01000072.1Sequence record reported by the local genomic context database.
Genomic interval1-406 nt406 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 064 ntGCF_000449885::NZ_AVIR01000072.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449885::NZ_AVIR01000072.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIR01000072.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 064 nt2 064 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 064 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIA_RS03290GCF_000449885#QIA_RS03290
RRCheYCurrent focus
1-406 nt · Forward (+)
QIA_RS03295GCF_000449885#QIA_RS03295
HKClassic
640-2 064 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449885#QIA_RS03290The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2295625
Simplified PFAM architecture for RROC_2295625
PFAM domain coverage: 86 / 134 aa (64.2%)
1 aa134 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-88]
- Domain count: 1
- Matched identifier: RROC_2295625
- Positioned domains: Response_reg 3-88 ; Response_reg 3-88
Cluster members and taxonomy
Representative gene: GCF_000449885#QIA_RS03290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 316 · GCF_000449885
AssemblyASM44988v2 · Contighaploid
Genome composition3 986 776 bp · 28,0% GCClostridioides difficile 6057
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key