1 HisKA#1
182-240 aa · 59 aa · 15.0% of protein
Raw token
HisKA:182:0.0000000000000143:240:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QGW_RS02340
Histidine kinase, Classic
Clostridioides difficile 824 · GCF_000449785
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449785#QGW_RS02340Stable P2CS identifier used across views.
GenomeGCF_000449785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 393 aa (40.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
293-391 aa · 99 aa · 25.2% of protein
Raw token
HATPase_c:293:2.07e-18:391:100:109- Raw architecture: HisKA:182:0.0000000000000143:240:59:64#HATPase_c:293:2.07e-18:391:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449785::NZ_AVIM01000017.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43640-45483Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQGW_0464RefSeq proteinWP_021390943.1
Context group ID
GCF_000449785::NZ_AVIM01000017.1::G00005Context members
QGW_RS02340QGW_RS02345
Partner locus tags
QGW_RS02340QGW_RS02345
Partner old locus tags
QGW_0464QGW_0465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021390943.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQGW_RS02340Primary locus identifier stored in the genes table.
Old locus tagQGW_0464Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIM01000017.1Sequence record reported by the local genomic context database.
Genomic interval43 640-44 821 nt1 182 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 640-45 483 ntGCF_000449785::NZ_AVIM01000017.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449785::NZ_AVIM01000017.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIM01000017.1All displayed genes belong to this local TCS context.
Neighborhood span43 640-45 483 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 640 nt45 483 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QGW_RS02340GCF_000449785#QGW_RS02340
HKClassicCurrent focus
43 640-44 821 nt · Reverse (-)
QGW_RS02345GCF_000449785#QGW_RS02345
RROmpR
44 821-45 483 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449785#QGW_RS02340The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503586
Simplified PFAM architecture for HKOC_2503586
PFAM domain coverage: 162 / 393 aa (41.2%)
1 aa393 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[179-240] | HATPase_c[292-391]
- Domain count: 2
- Matched identifier: HKOC_2503586
- Positioned domains: HisKA 179-240 ; HATPase_c 292-391
Cluster members and taxonomy
Representative gene: GCF_000449785#QGW_RS02340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 309 · GCF_000449785
AssemblyASM44978v2 · Contighaploid
Genome composition4 185 643 bp · 28,5% GCClostridioides difficile 824
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key