1 Response_reg#1
1-109 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:1:1.97e-32:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCU_RS02260
Response regulator OmpR family
Clostridioides difficile CD68 · GCF_000449165
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449165#QCU_RS02260Stable P2CS identifier used across views.
GenomeGCF_000449165Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 234 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 31.6% of protein
Raw token
Trans_reg_C:148:7.35e-26:221:74:77- Raw architecture: Response_reg:1:1.97e-32:109:111:111#Trans_reg_C:148:7.35e-26:221:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449165::NZ_AVHD01000030.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCU_0434RefSeq proteinWP_069956064.1
Context group ID
GCF_000449165::NZ_AVHD01000030.1::G00005Context members
QCU_RS02260QCU_RS02265
Partner locus tags
QCU_RS02260QCU_RS02265
Partner old locus tags
QCU_0434QCU_0435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_069956064.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCU_RS02260Primary locus identifier stored in the genes table.
Old locus tagQCU_0434Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHD01000030.1Sequence record reported by the local genomic context database.
Genomic interval1-705 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 126 ntGCF_000449165::NZ_AVHD01000030.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449165::NZ_AVHD01000030.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHD01000030.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 126 nt2 126 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCU_RS02260GCF_000449165#QCU_RS02260
RROmpRCurrent focus
1-705 nt · Forward (+)
QCU_RS02265GCF_000449165#QCU_RS02265
HKClassic
702-2 126 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449165#QCU_RS02260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049064
Simplified PFAM architecture for RROC_1049064
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-109] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1049064
- Positioned domains: Response_reg 1-109 ; Response_reg 1-109 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000449165#QCU_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 273 · GCF_000449165
AssemblyASM44916v2 · Contighaploid
Genome composition3 975 975 bp · 28,0% GCClostridioides difficile CD68
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key