1 Response_reg#1
5-114 aa · 110 aa · 49.5% of protein
Raw token
Response_reg:5:3.32e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCK_RS12460
Response regulator OmpR family
Clostridioides difficile CD45 · GCF_000449065
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449065#QCK_RS12460Stable P2CS identifier used across views.
GenomeGCF_000449065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.4% of protein
Raw token
Trans_reg_C:147:1.02e-29:218:77:77- Raw architecture: Response_reg:5:3.32e-34:114:111:111#Trans_reg_C:147:1.02e-29:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449065::NZ_AVGY01000122.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span850-2779Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCK_2235RefSeq proteinWP_003424455.1
Context group ID
GCF_000449065::NZ_AVGY01000122.1::G00035Context members
QCK_RS12455QCK_RS12460
Partner locus tags
QCK_RS12455QCK_RS12460
Partner old locus tags
QCK_2234QCK_2235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003424455.1Primary protein accession used for annex mappings.
UniProt accessionD5Q3K0Primary UniProt accession resolved in the annex database.
UniProt IDD5Q3K0_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCK_RS12460Primary locus identifier stored in the genes table.
Old locus tagQCK_2235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGY01000122.1Sequence record reported by the local genomic context database.
Genomic interval2 111-2 779 nt669 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span850-2 779 ntGCF_000449065::NZ_AVGY01000122.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449065::NZ_AVGY01000122.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGY01000122.1All displayed genes belong to this local TCS context.
Neighborhood span850-2 779 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
850 nt2 779 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCK_RS12455GCF_000449065#QCK_RS12455
HKClassic
850-2 127 nt · Reverse (-)
QCK_RS12460GCF_000449065#QCK_RS12460
RROmpRCurrent focus
2 111-2 779 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0210665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1637271
Simplified PFAM architecture for RROC_1637271
PFAM domain coverage: 182 / 222 aa (82.0%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-218]
- Domain count: 2
- Matched identifier: RROC_1637271
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-218 ; Trans_reg_C 147-218
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0210665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 268 · GCF_000449065
AssemblyASM44906v2 · Contighaploid
Genome composition4 367 906 bp · 28,5% GCClostridioides difficile CD45
Signal transduction countsGenes 98 · HK 46 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key