1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000372:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAQ_RS08350
Histidine kinase, Classic
Clostridioides difficile CD8 · GCF_000448845
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448845#QAQ_RS08350Stable P2CS identifier used across views.
GenomeGCF_000448845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 467 aa (51.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-311 aa · 67 aa · 14.3% of protein
Raw token
HisKA:245:0.0000000000000193:311:67:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:8.85e-27:465:108:109- Raw architecture: HAMP:166:0.00000372:232:69:69#HisKA:245:0.0000000000000193:311:67:64#HATPase_c:359:8.85e-27:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448845::NZ_AVGJ01000121.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4041-6179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAQ_1705RefSeq proteinWP_021360570.1
Context group ID
GCF_000448845::NZ_AVGJ01000121.1::G00023Context members
QAQ_RS08345QAQ_RS08350
Partner locus tags
QAQ_RS08345QAQ_RS08350
Partner old locus tags
QAQ_1704QAQ_1705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021360570.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAQ_RS08350Primary locus identifier stored in the genes table.
Old locus tagQAQ_1705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGJ01000121.1Sequence record reported by the local genomic context database.
Genomic interval4 776-6 179 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 041-6 179 ntGCF_000448845::NZ_AVGJ01000121.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448845::NZ_AVGJ01000121.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGJ01000121.1All displayed genes belong to this local TCS context.
Neighborhood span4 041-6 179 nt2 139 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 041 nt6 179 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAQ_RS08345GCF_000448845#QAQ_RS08345
RROmpR
4 041-4 766 nt · Forward (+)
QAQ_RS08350GCF_000448845#QAQ_RS08350
HKClassicCurrent focus
4 776-6 179 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900164705#B2B36_RS18445Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1716470
Simplified PFAM architecture for HKOC_1716470
PFAM domain coverage: 172 / 471 aa (36.5%)
1 aa471 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-313] | HATPase_c[363-469]
- Domain count: 2
- Matched identifier: HKOC_1716470
- Positioned domains: HisKA 249-313 ; HATPase_c 363-469
Cluster members and taxonomy
Representative gene: GCF_900164705#B2B36_RS18445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 253 · GCF_000448845
AssemblyASM44884v2 · Contighaploid
Genome composition4 044 267 bp · 28,5% GCClostridioides difficile CD8
Signal transduction countsGenes 93 · HK 45 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key