1 HAMP#1
309-378 aa · 70 aa · 11.6% of protein
Raw token
HAMP:309:0.000000000000188:378:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO42_RS05530
Histidine kinase, Classic
Catenibacterium sp. CAG:290 · GCF_000437715
ClassHKTypeClassicLength602 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000437715#QVO42_RS05530Stable P2CS identifier used across views.
GenomeGCF_000437715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length602 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage231 / 602 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa602 aa
Domain-by-domain annotation3 items
2 HisKA#2
397-461 aa · 65 aa · 10.8% of protein
Raw token
HisKA:397:2.99e-17:461:65:643 HATPase_c#3
506-601 aa · 96 aa · 15.9% of protein
Raw token
HATPase_c:506:9.11e-17:601:103:109- Raw architecture: HAMP:309:0.000000000000188:378:70:69#HisKA:397:2.99e-17:461:65:64#HATPase_c:506:9.11e-17:601:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000437715::NZ_FR898814.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17362-19819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN591_01071RefSeq proteinWP_022425159.1
Context group ID
GCF_000437715::NZ_FR898814.1::G00007Context members
QVO42_RS05530QVO42_RS05535
Partner locus tags
QVO42_RS05530QVO42_RS05535
Partner old locus tags
BN591_01071BN591_01072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022425159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO42_RS05530Primary locus identifier stored in the genes table.
Old locus tagBN591_01071Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR898814.1Sequence record reported by the local genomic context database.
Genomic interval17 362-19 170 nt1 809 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 362-19 819 ntGCF_000437715::NZ_FR898814.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000437715::NZ_FR898814.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR898814.1All displayed genes belong to this local TCS context.
Neighborhood span17 362-19 819 nt2 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 362 nt19 819 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVO42_RS05530GCF_000437715#QVO42_RS05530
HKClassicCurrent focus
17 362-19 170 nt · Reverse (-)
QVO42_RS05535GCF_000437715#QVO42_RS05535
RROmpR
19 157-19 819 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000437715#QVO42_RS05530The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1042120
Simplified PFAM architecture for HKOC_1042120
PFAM domain coverage: 211 / 602 aa (35.0%)
1 aa602 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[327-377] | HisKA[397-461] | HATPase_c[506-600]
- Domain count: 3
- Matched identifier: HKOC_1042120
- Positioned domains: HAMP 327-377 ; HisKA 397-461 ; HATPase_c 506-600
Cluster members and taxonomy
Representative gene: GCF_000437715#QVO42_RS05530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 767 · GCF_000437715
AssemblyMGS290 · Scaffoldhaploid
Genome composition2 018 079 bp · 33,5% GCCatenibacterium sp. CAG:290
Signal transduction countsGenes 24 · HK 10 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key