1 Response_reg#1
6-115 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:6:3.15e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO42_RS03220
Response regulator OmpR family
Catenibacterium sp. CAG:290 · GCF_000437715
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000437715#QVO42_RS03220Stable P2CS identifier used across views.
GenomeGCF_000437715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:7.84e-29:229:77:77- Raw architecture: Response_reg:6:3.15e-34:115:111:111#Trans_reg_C:153:7.84e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000437715::NZ_FR898789.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12-1828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN591_00617RefSeq proteinWP_022424738.1
Context group ID
GCF_000437715::NZ_FR898789.1::G00004Context members
QVO42_RS03215QVO42_RS03220
Partner locus tags
QVO42_RS03215QVO42_RS03220
Partner old locus tags
BN591_00616BN591_00617
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022424738.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7K8G7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7K8G7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO42_RS03220Primary locus identifier stored in the genes table.
Old locus tagBN591_00617Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR898789.1Sequence record reported by the local genomic context database.
Genomic interval1 133-1 828 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12-1 828 ntGCF_000437715::NZ_FR898789.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000437715::NZ_FR898789.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR898789.1All displayed genes belong to this local TCS context.
Neighborhood span12-1 828 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 nt1 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVO42_RS03215GCF_000437715#QVO42_RS03215
HKClassic
12-1 133 nt · Reverse (-)
QVO42_RS03220GCF_000437715#QVO42_RS03220
RROmpRCurrent focus
1 133-1 828 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000437715#QVO42_RS03220The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1160129
Simplified PFAM architecture for RROC_1160129
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1160129
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000437715#QVO42_RS03220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 767 · GCF_000437715
AssemblyMGS290 · Scaffoldhaploid
Genome composition2 018 079 bp · 33,5% GCCatenibacterium sp. CAG:290
Signal transduction countsGenes 24 · HK 10 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key