1 Response_reg#1
5-113 aa · 109 aa · 48.0% of protein
Raw token
Response_reg:5:0.0000000805:113:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO42_RS04445
Response regulator LytTR family
Catenibacterium sp. CAG:290 · GCF_000437715
ClassRRTypeLytTRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000437715#QVO42_RS04445Stable P2CS identifier used across views.
GenomeGCF_000437715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 227 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 LytTR#2
133-213 aa · 81 aa · 35.7% of protein
Raw token
LytTR:133:0.000000169:213:86:98- Raw architecture: Response_reg:5:0.0000000805:113:116:111#LytTR:133:0.000000169:213:86:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000437715::NZ_FR898804.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1871-2554Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN591_00856RefSeq proteinWP_022424966.1
Context group ID
GCF_000437715::NZ_FR898804.1::G00006Context members
QVO42_RS04445
Partner locus tags
QVO42_RS04445
Partner old locus tags
BN591_00856
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022424966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO42_RS04445Primary locus identifier stored in the genes table.
Old locus tagBN591_00856Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR898804.1Sequence record reported by the local genomic context database.
Genomic interval1 871-2 554 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 871-2 554 ntGCF_000437715::NZ_FR898804.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000437715::NZ_FR898804.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR898804.1All displayed genes belong to this local TCS context.
Neighborhood span1 871-2 554 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 871 nt2 554 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QVO42_RS04445GCF_000437715#QVO42_RS04445
RRLytTRCurrent focus
1 871-2 554 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000437715#QVO42_RS04445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356866
Simplified PFAM architecture for RROC_1356866
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-106] | LytTR[132-214]
- Domain count: 2
- Matched identifier: RROC_1356866
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; LytTR 132-214 ; LytTR 132-214
Cluster members and taxonomy
Representative gene: GCF_000437715#QVO42_RS04445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 767 · GCF_000437715
AssemblyMGS290 · Scaffoldhaploid
Genome composition2 018 079 bp · 33,5% GCCatenibacterium sp. CAG:290
Signal transduction countsGenes 24 · HK 10 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key