1 HAMP#1
53-121 aa · 69 aa · 18.5% of protein
Raw token
HAMP:53:0.0000013:121:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO42_RS03215
Histidine kinase, Classic
Catenibacterium sp. CAG:290 · GCF_000437715
ClassHKTypeClassicLength373 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000437715#QVO42_RS03215Stable P2CS identifier used across views.
GenomeGCF_000437715Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Catenibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length373 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 373 aa (65.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa373 aa
Domain-by-domain annotation3 items
2 HisKA#2
146-212 aa · 67 aa · 18.0% of protein
Raw token
HisKA:146:0.00000000000000553:212:67:643 HATPase_c#3
259-366 aa · 108 aa · 29.0% of protein
Raw token
HATPase_c:259:1.24e-25:366:109:109- Raw architecture: HAMP:53:0.0000013:121:69:69#HisKA:146:0.00000000000000553:212:67:64#HATPase_c:259:1.24e-25:366:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000437715::NZ_FR898789.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12-1828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN591_00616RefSeq proteinWP_287845885.1
Context group ID
GCF_000437715::NZ_FR898789.1::G00004Context members
QVO42_RS03215QVO42_RS03220
Partner locus tags
QVO42_RS03215QVO42_RS03220
Partner old locus tags
BN591_00616BN591_00617
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287845885.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO42_RS03215Primary locus identifier stored in the genes table.
Old locus tagBN591_00616Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR898789.1Sequence record reported by the local genomic context database.
Genomic interval12-1 133 nt1 122 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12-1 828 ntGCF_000437715::NZ_FR898789.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000437715::NZ_FR898789.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR898789.1All displayed genes belong to this local TCS context.
Neighborhood span12-1 828 nt1 817 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 nt1 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVO42_RS03215GCF_000437715#QVO42_RS03215
HKClassicCurrent focus
12-1 133 nt · Reverse (-)
QVO42_RS03220GCF_000437715#QVO42_RS03220
RROmpR
1 133-1 828 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004168205#EAI80_RS00890Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2658940
Simplified PFAM architecture for HKOC_2658940
PFAM domain coverage: 218 / 374 aa (58.3%)
1 aa374 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[78-120] | HisKA[147-213] | HATPase_c[260-367]
- Domain count: 3
- Matched identifier: HKOC_2658940
- Positioned domains: HAMP 78-120 ; HisKA 147-213 ; HATPase_c 260-367
Cluster members and taxonomy
Representative gene: GCF_004168205#EAI80_RS00890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 767 · GCF_000437715
AssemblyMGS290 · Scaffoldhaploid
Genome composition2 018 079 bp · 33,5% GCCatenibacterium sp. CAG:290
Signal transduction countsGenes 24 · HK 10 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusCatenibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Catenibacterium
Related genes
Preview from the same derived genome key