1 Response_reg#1
8-116 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:8:7.25e-35:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVO97_RS01860
Response regulator OmpR family
Clostridium sp. CAG:43 · GCF_000434655
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000434655#QVO97_RS01860Stable P2CS identifier used across views.
GenomeGCF_000434655Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 234 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:5.25e-30:229:77:77- Raw architecture: Response_reg:8:7.25e-35:116:110:111#Trans_reg_C:153:5.25e-30:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000434655::NZ_FR895020.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47771-49875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN653_00314RefSeq proteinWP_022358722.1
Context group ID
GCF_000434655::NZ_FR895020.1::G00003Context members
QVO97_RS01855QVO97_RS01860
Partner locus tags
QVO97_RS01855QVO97_RS01860
Partner old locus tags
BN653_00313BN653_00314
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022358722.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X4L4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X4L4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVO97_RS01860Primary locus identifier stored in the genes table.
Old locus tagBN653_00314Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_FR895020.1Sequence record reported by the local genomic context database.
Genomic interval49 171-49 875 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span47 771-49 875 ntGCF_000434655::NZ_FR895020.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000434655::NZ_FR895020.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FR895020.1All displayed genes belong to this local TCS context.
Neighborhood span47 771-49 875 nt2 105 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 771 nt49 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVO97_RS01855GCF_000434655#QVO97_RS01855
HKClassic
47 771-49 174 nt · Reverse (-)
QVO97_RS01860GCF_000434655#QVO97_RS01860
RROmpRCurrent focus
49 171-49 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS01860The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049016
Simplified PFAM architecture for RROC_1049016
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-115] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1049016
- Positioned domains: Response_reg 8-115 ; Response_reg 8-115 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 262 805 · GCF_000434655
AssemblyMGS43 · Scaffoldhaploid
Genome composition2 618 944 bp · 49,0% GCClostridium sp. CAG:43
Signal transduction countsGenes 44 · HK 22 · RR 21CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key