1 HisKA#1
151-214 aa · 64 aa · 15.7% of protein
Raw token
HisKA:151:0.0000000000158:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0117155
Histidine kinase, Classic
Dorea longicatena AGR2136 · GCF_000424345
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0117155Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 407 aa (42.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-371 aa · 109 aa · 26.8% of protein
Raw token
HATPase_c:263:3.11e-26:371:110:109- Raw architecture: HisKA:151:0.0000000000158:214:64:64#HATPase_c:263:3.11e-26:371:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_KE384170.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10839-12741Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_KE384170.1::G00018Context members
G617_RS0117155G617_RS0117160
Partner locus tags
G617_RS0117155G617_RS0117160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_028088355.1Primary protein accession used for annex mappings.
UniProt accessionA0A174UDJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174UDJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0117155Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384170.1Sequence record reported by the local genomic context database.
Genomic interval10 839-12 062 nt1 224 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 839-12 741 ntGCF_000424345::NZ_KE384170.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_KE384170.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384170.1All displayed genes belong to this local TCS context.
Neighborhood span10 839-12 741 nt1 903 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 839 nt12 741 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0117155GCF_000424345#G617_RS0117155
HKClassicCurrent focus
10 839-12 062 nt · Reverse (-)
G617_RS0117160GCF_000424345#G617_RS0117160
RROmpR
12 052-12 741 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0117155The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2380227
Simplified PFAM architecture for HKOC_2380227
PFAM domain coverage: 174 / 407 aa (42.8%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2380227
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0117155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key