1 Response_reg#1
4-113 aa · 110 aa · 42.0% of protein
Raw token
Response_reg:4:0.000000000000154:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0109635
Response regulator LytTR family
Dorea longicatena AGR2136 · GCF_000424345
ClassRRTypeLytTRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424345#G617_RS0109635Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 262 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-247 aa · 92 aa · 35.1% of protein
Raw token
LytTR:156:0.0000000000824:247:95:98- Raw architecture: Response_reg:4:0.000000000000154:113:112:111#LytTR:156:0.0000000000824:247:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424345::NZ_AUJS01000038.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27804-28592Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000038.1::G00038Context members
G617_RS0109635
Partner locus tags
G617_RS0109635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_028087264.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0109635Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000038.1Sequence record reported by the local genomic context database.
Genomic interval27 804-28 592 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 804-28 592 ntGCF_000424345::NZ_AUJS01000038.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000038.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000038.1All displayed genes belong to this local TCS context.
Neighborhood span27 804-28 592 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 804 nt28 592 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G617_RS0109635GCF_000424345#G617_RS0109635
RRLytTRCurrent focus
27 804-28 592 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0109635The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644320
Simplified PFAM architecture for RROC_0644320
PFAM domain coverage: 202 / 262 aa (77.1%)
1 aa262 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[157-247]
- Domain count: 2
- Matched identifier: RROC_0644320
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 157-247 ; LytTR 157-247
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0109635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key