1 PAS#1
112-215 aa · 104 aa · 21.5% of protein
Raw token
PAS:112:0.0000000000003:215:112:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS19320
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS19320Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 483 aa (59.4%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-301 aa · 71 aa · 14.7% of protein
Raw token
HisKA:231:0.0000000000000945:301:71:643 HATPase_c#3
348-459 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:348:1.49e-31:459:112:109- Raw architecture: PAS:112:0.0000000000003:215:112:113#HisKA:231:0.0000000000000945:301:71:64#HATPase_c:348:1.49e-31:459:112:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_KE384149.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4769-6220Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384149.1::G00021Context members
G605_RS19320
Partner locus tags
G605_RS19320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_168972394.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS19320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384149.1Sequence record reported by the local genomic context database.
Genomic interval4 769-6 220 nt1 452 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 769-6 220 ntGCF_000424205::NZ_KE384149.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384149.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384149.1All displayed genes belong to this local TCS context.
Neighborhood span4 769-6 220 nt1 452 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 769 nt6 220 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS19320GCF_000424205#G605_RS19320
HKClassicCurrent focus
4 769-6 220 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS19320The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1594418
Simplified PFAM architecture for HKOC_1594418
PFAM domain coverage: 286 / 483 aa (59.2%)
1 aa483 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[111-215] | HisKA[232-301] | HATPase_c[348-458]
- Domain count: 3
- Matched identifier: HKOC_1594418
- Positioned domains: PAS 111-215 ; HisKA 232-301 ; HATPase_c 348-458
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS19320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key