1 HAMP#1
173-242 aa · 70 aa · 15.3% of protein
Raw token
HAMP:173:0.000000000685:242:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS19130
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS19130Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 458 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-309 aa · 59 aa · 12.9% of protein
Raw token
HisKA:251:5.8e-17:309:59:643 HATPase_c#3
356-458 aa · 103 aa · 22.5% of protein
Raw token
HATPase_c:356:1.74e-24:458:107:109- Raw architecture: HAMP:173:0.000000000685:242:70:69#HisKA:251:5.8e-17:309:59:64#HATPase_c:356:1.74e-24:458:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000017.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82192-84262Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000017.1::G00032Context members
G605_RS0109545G605_RS19130
Partner locus tags
G605_RS0109545G605_RS19130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_051196262.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS19130Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000017.1Sequence record reported by the local genomic context database.
Genomic interval82 886-84 262 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span82 192-84 262 ntGCF_000424205::NZ_AUJL01000017.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000017.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000017.1All displayed genes belong to this local TCS context.
Neighborhood span82 192-84 262 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 192 nt84 262 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0109545GCF_000424205#G605_RS0109545
RROmpR
82 192-82 893 nt · Forward (+)
G605_RS19130GCF_000424205#G605_RS19130
HKClassicCurrent focus
82 886-84 262 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS19130The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1859052
Simplified PFAM architecture for HKOC_1859052
PFAM domain coverage: 208 / 458 aa (45.4%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[194-241] | HisKA[251-309] | HATPase_c[357-457]
- Domain count: 3
- Matched identifier: HKOC_1859052
- Positioned domains: HAMP 194-241 ; HisKA 251-309 ; HATPase_c 357-457
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS19130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key