1 HisKA#1
123-181 aa · 59 aa · 17.3% of protein
Raw token
HisKA:123:0.00000000000136:181:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS17565
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS17565Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 342 aa (48.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-342 aa · 106 aa · 31.0% of protein
Raw token
HATPase_c:237:5.6e-23:342:107:109- Raw architecture: HisKA:123:0.00000000000136:181:59:64#HATPase_c:237:5.6e-23:342:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219084-220831Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000001.1::G00004Context members
G605_RS17565G605_RS0101020
Partner locus tags
G605_RS17565G605_RS0101020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051196136.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2K8V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2K8V7_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS17565Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000001.1Sequence record reported by the local genomic context database.
Genomic interval219 084-220 112 nt1 029 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 084-220 831 ntGCF_000424205::NZ_AUJL01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span219 084-220 831 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 084 nt220 831 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS17565GCF_000424205#G605_RS17565
HKClassicCurrent focus
219 084-220 112 nt · Reverse (-)
G605_RS0101020GCF_000424205#G605_RS0101020
RROmpR
220 115-220 831 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS17565The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2831673
Simplified PFAM architecture for HKOC_2831673
PFAM domain coverage: 162 / 342 aa (47.4%)
1 aa342 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[123-181] | HATPase_c[238-340]
- Domain count: 2
- Matched identifier: HKOC_2831673
- Positioned domains: HisKA 123-181 ; HATPase_c 238-340
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS17565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key