1 Response_reg#1
4-116 aa · 113 aa · 50.2% of protein
Raw token
Response_reg:4:1.62e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0117435
Response regulator, unclassified
Clostridium cadaveris AGR2141 · GCF_000424205
ClassRRTypeunclassifiedLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000424205#G605_RS0117435Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 225 aa (50.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.62e-28:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000424205::NZ_KE384150.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85324-86001Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384150.1::G00027Context members
G605_RS0117435
Partner locus tags
G605_RS0117435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027640259.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2MGC3Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2MGC3_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0117435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384150.1Sequence record reported by the local genomic context database.
Genomic interval85 324-86 001 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 324-86 001 ntGCF_000424205::NZ_KE384150.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384150.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384150.1All displayed genes belong to this local TCS context.
Neighborhood span85 324-86 001 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 324 nt86 001 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G605_RS0117435GCF_000424205#G605_RS0117435
RRunclassifiedCurrent focus
85 324-86 001 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0117435The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1466254
Simplified PFAM architecture for RROC_1466254
PFAM domain coverage: 111 / 225 aa (49.3%)
1 aa225 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-114]
- Domain count: 1
- Matched identifier: RROC_1466254
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0117435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key