1 HisKA#1
121-172 aa · 52 aa · 15.4% of protein
Raw token
HisKA:121:0.00000974:172:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0117305
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0117305Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 338 aa (48.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-332 aa · 112 aa · 33.1% of protein
Raw token
HATPase_c:221:9.81e-24:332:112:109- Raw architecture: HisKA:121:0.00000974:172:58:64#HATPase_c:221:9.81e-24:332:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_KE384150.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61196-62880Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384150.1::G00025Context members
G605_RS0117305G605_RS0117310
Partner locus tags
G605_RS0117305G605_RS0117310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027640236.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2MFF1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2MFF1_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0117305Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384150.1Sequence record reported by the local genomic context database.
Genomic interval61 196-62 212 nt1 017 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 196-62 880 ntGCF_000424205::NZ_KE384150.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384150.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384150.1All displayed genes belong to this local TCS context.
Neighborhood span61 196-62 880 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 196 nt62 880 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0117305GCF_000424205#G605_RS0117305
HKClassicCurrent focus
61 196-62 212 nt · Reverse (-)
G605_RS0117310GCF_000424205#G605_RS0117310
RROmpR
62 209-62 880 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0117305The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2842055
Simplified PFAM architecture for HKOC_2842055
PFAM domain coverage: 110 / 338 aa (32.5%)
1 aa338 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-330]
- Domain count: 1
- Matched identifier: HKOC_2842055
- Positioned domains: HATPase_c 221-330
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0117305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key