1 HisKA#1
197-259 aa · 63 aa · 15.3% of protein
Raw token
HisKA:197:0.000000000192:259:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0117170
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength413 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0117170Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length413 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 413 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa413 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
302-408 aa · 107 aa · 25.9% of protein
Raw token
HATPase_c:302:6.65e-22:408:107:109- Raw architecture: HisKA:197:0.000000000192:259:63:64#HATPase_c:302:6.65e-22:408:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_KE384150.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19426-21367Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_KE384150.1::G00024Context members
G605_RS0117165G605_RS0117170
Partner locus tags
G605_RS0117165G605_RS0117170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_035771531.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0117170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE384150.1Sequence record reported by the local genomic context database.
Genomic interval20 126-21 367 nt1 242 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 426-21 367 ntGCF_000424205::NZ_KE384150.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_KE384150.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE384150.1All displayed genes belong to this local TCS context.
Neighborhood span19 426-21 367 nt1 942 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 426 nt21 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0117165GCF_000424205#G605_RS0117165
RROmpR
19 426-20 139 nt · Forward (+)
G605_RS0117170GCF_000424205#G605_RS0117170
HKClassicCurrent focus
20 126-21 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0117170The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2328334
Simplified PFAM architecture for HKOC_2328334
PFAM domain coverage: 171 / 413 aa (41.4%)
1 aa413 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-259] | HATPase_c[303-409]
- Domain count: 2
- Matched identifier: HKOC_2328334
- Positioned domains: HisKA 196-259 ; HATPase_c 303-409
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0117170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key